Finch: Toxicity Dose Response Curve Prediction of Chemical Compounds and Mixtures

A paradigm shift in chemical risk assessment is emphasizing mixture testing over single compound analysis, eliminating animal testing, and adopting advanced modeling approaches to understand mixture activity profiles. However, existing computational models largely focus on single chemicals, with few effective solutions for modeling complex mixtures that account for synergistic or antagonistic effects and multiple Modes of Action (MoA). Conventional methods like concentration addition (CA) and independent action (IA) are insufficient for this task as they are designed for simplistic interactions and struggle to account for the dynamic and multifaceted nature of chemical mixtures, such as overlapping MoA and non-linear interactions. Finch offers a novel approach utilizing deep learning (DL) embeddings and multi-task quantitative structure-activity relationship (QSAR) models to improve chemical exposure prediction. By leveraging molecular descriptors, physiochemical properties, and large language model (LLM) embeddings from SMILES inputs, Finch preserves critical information in a latent space thereby enhancing predictive accuracy. The multi-task learning aspect of Finch is highly advantageous, as it simultaneously optimizes multiple loss functions, leveraging all available data across tasks to develop generalized representations that effectively capture complex ingredient interactions within mixtures.. Authors: Shouaib, Abdullah D. [Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)]; Zapanta, John [Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)]; Davern, Sean P. [Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)]; Dixon, Samuel J. [Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)]; Stromberg, Zachary R. [Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)]. DOE Contract: AC05-76RL01830. Subjects: 59 BASIC BIOLOGICAL SCIENCES; 63 RADIATION, THERMAL, AND OTHER ENVIRON. POLLUTANT EFFECTS ON LIVING ORGS. AND BIOL. MAT.